Input boxes for gene IDs
Paste or upload your gene IDs here. If you wish to input two clusters, you must click the button below the text areas to enable this.

Length of sequences
This is the length of the input sequences. Maximum limit is 3000 (800 when using Saccharomyces cerevisiae).

Please select one from the drop-down list. Organism contain the upstream regions of almost every gene in the selected genome. Currently available species are: Anopheles gambiae, Arabidopsis thaliana, Homo sapiens, Mus musculus, Drosophila melanogaster, Caenorhabditis elegans, Saccharomyces cerevisiae. The suffix full is the complete sequence set (as it is in the ENSEMBL or in TAIR) whereas suffix clean is a filtered sequence set where sequences containing other letters than A,C,G or T have been removed.

Sequences of the genes
These textboxes contain retrieved up-stream sequences. You can futher analyze them by using the buttons at the bottom of the page or by copy-pasting them into the desired tool.

This tool was developed by Matti Kankainen, University of Helsinki
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© 2006 University of Helsinki