POCO
POCO is tool to find over-represented, under-represented and distinctly represented regulatory patterns from either one or two sequence sets.

POCO 2nd
POCO 2nd is a tool to discover over-represented, under-represented and distinctly represented potential cis-elements from either one or two sequence sets that are located in the vicinity of a pre-defined cis-element.

UPDATES
Here you can find the list of the updates performed on POCO and on POCO 2nd.

DOWNLOAD
The download package for Unix/Linux contains the binary code and a file that has the compiling commands. The MySQL flatfiles are not included.

DOWNLOAD BACKGROUND
The download package contains MySQL dump files (size ~82 MB). We recommend you to generate your own background files by retrieving your own sequence sets.

TO CITE POCO, PLEASE USE THE FOLLOWING
Kankainen,M. and Holm,L. (2005) POCO: discovery of regulatory patterns from promoters of oppositely expressed gene sets. Nucleic Acids Research, 33(Web Server issue), W427-431.


This tool was developed by Matti Kankainen, University of Helsinki
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© 2005 University of Helsinki