Putative pilus operons in human distal gut metagenome (Gill et al, 2006)

GI	ORF	HMMnames	HMMans	HMMscores	HMMevalues	signalpep	C-anchor
GI	ORF	HMMnames	HMMans	HMMscores	HMMevalues	signalpep	C-anchor
P: 1.0506e-07, P_adj: 0.009, score: 459
106754383	_orf_frame:-3_pos:179_len:166	E-box	[none]	1.0	1.3e+03	Y	N
106754383	_orf_frame:-3_pos:689_len:342	null	[none]	0	88452	Y	N
106754383	_orf_frame:-1_pos:1711_len:286	sortase_fam,Sortase	TIGR01076,PF04203.4	197.4,191.3	3.3e-55,2.4e-53	Y	Y
106754383	_orf_frame:-3_pos:2573_len:290	sortase_fam,Sortase,LPXTG_anchor	TIGR01076,PF04203.4,TIGR01167	227.9,215.6,0.5	2.2e-64,1.1e-60,44	N	Y
106754383	_orf_frame:-3_pos:3485_len:305	LPXTG_anchor,Gram_pos_anchor,E-box	TIGR01167,PF00746.12,[none]	32.7,26.4,10.0	1.3e-05,0.00097,19	N	Y

P: 1.0506e-07, P_adj: 0.009, score: 513.1
106750760	_orf_frame:1_pos:247_len:1910	E-box,LPXTG_anchor,Gram_pos_anchor	[none],TIGR01167,PF00746.12	29.1,19.8,17.4	0.00015,0.099,0.52	Y	Y
106750760	_orf_frame:3_pos:5991_len:136	null	[none]	0	88452	Y	N
106750760	_orf_frame:1_pos:6427_len:363	Gram_pos_anchor,LPXTG_anchor,E-box	PF00746.12,TIGR01167,[none]	36.1,31.5,12.9	1.2e-06,3e-05,4.9	N	Y
106750760	_orf_frame:2_pos:7661_len:291	Sortase,sortase_fam	PF04203.4,TIGR01076	222.5,220.0	9.1e-63,5.1e-62	N	Y
106750760	_orf_frame:2_pos:8537_len:244	Sortase,sortase_fam	PF04203.4,TIGR01076	225.4,217.4	1.2e-63,3.1e-61	N	N

P: 1.76037e-06, P_adj: 0.175, score: 310.7
106743233	_orf_frame:2_pos:-1_len:195	LPXTG_anchor,Gram_pos_anchor,E-box	TIGR01167,PF00746.12,[none]	29.5,22.9,17.9	0.00011,0.012,0.37	N	Y
106743233	_orf_frame:1_pos:706_len:396	CnaB,E-box,Gram_pos_anchor,LPXTG_anchor	[none],[none],PF00746.12,TIGR01167	63.8,5.3,4.2,1.1	5.5e-15,1.7e+02,10,37	N	Y
106743233	_orf_frame:2_pos:1862_len:354	sortase_fam,Sortase	TIGR01076,PF04203.4	217.4,207.0	3.2e-61,4.2e-58	N	Y

P: 1.76037e-06, P_adj: 0.175, score: 385
106759184	_orf_frame:1_pos:-2_len:562	Gram_pos_anchor,LPXTG_anchor,E-box	PF00746.12,TIGR01167,[none]	28.8,27.7,13.8	0.00019,0.0004,3.2	N	Y
106759184	_orf_frame:2_pos:1685_len:285	sortase_fam,Sortase	TIGR01076,PF04203.4	215.4,185.7	1.3e-60,1.1e-51	Y	Y
106759184	_orf_frame:1_pos:2530_len:238	sortase_fam,Sortase	TIGR01076,PF04203.4	140.8,139.2	3.7e-38,1.1e-37	N	N

P: 1.76037e-06, P_adj: 0.175, score: 277.5
106758979	_orf_frame:-3_pos:678_len:296	sortase_fam,Sortase	TIGR01076,PF04203.4	241.4,216.4	1.9e-68,6.4e-61	N	Y
106758979	_orf_frame:-2_pos:1672_len:543	Gram_pos_anchor,E-box,LPXTG_anchor	PF00746.12,[none],TIGR01167	22.2,21.3,20.2	0.018,0.034,0.074	Y	Y
106758979	_orf_frame:-3_pos:3297_len:131	E-box,LPXTG_anchor	[none],TIGR01167	13.9,6.2	3.1,9.9	N	Y

P: 0.000145928, P_adj: 1, score: 2.9
106748232	_orf_frame:-2_pos:0_len:452	srtB_sig_NPQTN	TIGR03068	1.5	1.2e+02	N	N
106748232	_orf_frame:-2_pos:1362_len:297	E-box	[none]	1.4	1.1e+03	N	N

P: 0.000145928, P_adj: 1, score: 69
106742212	_orf_frame:-2_pos:0_len:310	E-box	[none]	41.2	3.5e-08	N	N
106742212	_orf_frame:-1_pos:598_len:272	E-box	[none]	27.8	0.00039	N	N

P: 0.000145928, P_adj: 1, score: 59.5
106739752	_orf_frame:2_pos:-1_len:101	Sortase	PF04203.4	47.9	3.3e-10	N	N
106739752	_orf_frame:2_pos:320_len:493	E-box	[none]	11.6	9.2	Y	N

P: 0.000145928, P_adj: 1, score: 1.5
106738694	_orf_frame:1_pos:-2_len:642	E-box	[none]	0.1	2e+03	N	N
106738694	_orf_frame:3_pos:459_len:122	E-box	[none]	1.4	1.1e+03	N	N

P: 0.000145928, P_adj: 1, score: 37.2
106738403	_orf_frame:1_pos:-2_len:114	LPXTG_anchor	TIGR01167	7.4	7.3	N	Y
106738403	_orf_frame:2_pos:479_len:525	Gram_pos_anchor,LPXTG_anchor,E-box	PF00746.12,TIGR01167,[none]	29.8,26.3,2.4	9.4e-05,0.0011,6.8e+02	Y	Y

P: 0.000145928, P_adj: 1, score: 2.9
106760252	_orf_frame:-2_pos:6233_len:571	srtB_sig_NPQTN	TIGR03068	1.5	1.2e+02	N	N
106760252	_orf_frame:-2_pos:7952_len:461	E-box	[none]	1.4	1.1e+03	N	N

P: 0.000145928, P_adj: 1, score: 238.1
106759622	_orf_frame:-3_pos:-2_len:317	sortase_fam,Sortase	TIGR01076,PF04203.4	199.8,195.1	6.2e-56,1.6e-54	Y	Y
106759622	_orf_frame:-3_pos:1102_len:120	Gram_pos_anchor,LPXTG_anchor	PF00746.12,TIGR01167	38.3,32.1	2.6e-07,2e-05	N	Y

P: 0.000145928, P_adj: 1, score: 1.9
106759286	_orf_frame:2_pos:326_len:244	E-box	[none]	1.6	9.7e+02	N	Y
106759286	_orf_frame:2_pos:1199_len:848	E-box	[none]	0.3	1.8e+03	N	N

P: 0.000145928, P_adj: 1, score: 157.7
106758178	_orf_frame:2_pos:-1_len:217	E-box,LPXTG_anchor,Gram_pos_anchor,srtB_target	[none],TIGR01167,PF00746.12,TIGR03063	37.2,15.7,6.0,3.2	5.7e-07,0.85,6.8,25	N	Y
106758178	_orf_frame:1_pos:718_len:262	sortase_srtB,Sortase_B	TIGR03064,PF07170.2	120.5,98.6	4.6e-32,1.8e-25	N	N

P: 0.000145928, P_adj: 1, score: 20
106754549	_orf_frame:-3_pos:-2_len:263	E-box	[none]	3.0	5.2e+02	Y	N
106754549	_orf_frame:-1_pos:783_len:106	LPXTG_anchor	TIGR01167	17.0	0.61	N	Y

P: 0.000145928, P_adj: 1, score: 191.1
106753718	_orf_frame:3_pos:1899_len:303	LPXTG_anchor,srtB_sig_QVPTGV	TIGR01167,TIGR03065	14.7,10.3	1.1,2.5	N	Y
106753718	_orf_frame:3_pos:2877_len:293	Sortase_B,sortase_srtB	PF07170.2,TIGR03064	176.4,151.1	6.8e-49,2.9e-41	N	Y

P: 0.000145928, P_adj: 1, score: 67.1
106750554	_orf_frame:3_pos:0_len:898	CnaB,E-box,srtB_target,LPXTG_anchor	[none],[none],TIGR03063,TIGR01167	53.7,20.1,9.1,4.0	5.9e-12,0.076,3.8,18	N	Y
106750554	_orf_frame:2_pos:3287_len:546	E-box	[none]	13.4	3.9	Y	N

P: 0.000145928, P_adj: 1, score: 97.7
106749331	_orf_frame:3_pos:3150_len:489	E-box	[none]	1.2	1.2e+03	Y	N
106749331	_orf_frame:2_pos:4325_len:1222	E-box	[none]	96.5	7.8e-25	N	N

P: 0.000145928, P_adj: 1, score: 1.5
106749170	_orf_frame:1_pos:-2_len:1086	E-box	[none]	0.1	2e+03	Y	N
106749170	_orf_frame:3_pos:1269_len:122	E-box	[none]	1.4	1.1e+03	N	N

P: 0.000145928, P_adj: 1, score: 205.2
106749105	_orf_frame:1_pos:745_len:135	Gram_pos_anchor,LPXTG_anchor,E-box	PF00746.12,TIGR01167,[none]	12.4,8.3,5.4	1.6,5.8,1.7e+02	N	Y
106749105	_orf_frame:1_pos:1867_len:313	Sortase,sortase_fam	PF04203.4,TIGR01076	192.8,180.9	8.2e-54,3.2e-50	N	Y

P: 0.000145928, P_adj: 1, score: 40.2
106748685	_orf_frame:1_pos:-2_len:364	E-box,LPXTG_anchor,Gram_pos_anchor	[none],TIGR01167,PF00746.12	12.0,10.7,5.0	7.8,3.1,8.5	N	Y
106748685	_orf_frame:1_pos:1090_len:615	Gram_pos_anchor,LPXTG_anchor,E-box	PF00746.12,TIGR01167,[none]	28.2,19.6,14.2	0.00029,0.11,2.7	Y	Y

P: 0.000434263, P_adj: 1, score: 100.9
106747015	_orf_frame:-2_pos:-1_len:237	Sortase,sortase_fam	PF04203.4,TIGR01076	85.3,74.1	1.9e-21,4.3e-18	N	N
106747015	_orf_frame:-3_pos:34_len:133	null	[none]	0	88452	N	N
106747015	_orf_frame:-2_pos:734_len:201	E-box,LPXTG_anchor	[none],TIGR01167	15.6,11.8	1.4,2.3	N	Y

P: 0.000434263, P_adj: 1, score: 19.8
106746069	_orf_frame:-2_pos:-2_len:1045	CnaB,E-box	[none],[none]	4.1,1.0	0.0014,1.3e+03	Y	N
106746069	_orf_frame:-3_pos:2511_len:123	null	[none]	0	88452	N	N
106746069	_orf_frame:-3_pos:3555_len:100	Gram_pos_anchor,LPXTG_anchor	PF00746.12,TIGR01167	15.7,9.5	0.75,4.3	N	Y

P: 0.000434263, P_adj: 1, score: 77.3
106744895	_orf_frame:1_pos:1054_len:169	E-box	[none]	0.5	1.6e+03	N	Y
106744895	_orf_frame:2_pos:1565_len:237	null	[none]	0	88452	Y	N
106744895	_orf_frame:2_pos:2300_len:1019	E-box	[none]	76.8	6.9e-19	Y	Y

P: 0.000434263, P_adj: 1, score: 22.4
106744774	_orf_frame:-1_pos:-1_len:602	E-box	[none]	2.7	5.8e+02	N	N
106744774	_orf_frame:-1_pos:1826_len:459	null	[none]	0	88452	Y	N
106744774	_orf_frame:-2_pos:3238_len:132	E-box	[none]	19.7	0.11	N	Y

P: 0.000434263, P_adj: 1, score: 36.2
106742010	_orf_frame:1_pos:-2_len:128	Gram_pos_anchor,LPXTG_anchor	PF00746.12,TIGR01167	6.2,3.8	6.5,19	N	Y
106742010	_orf_frame:3_pos:63_len:140	null	[none]	0	88452	N	N
106742010	_orf_frame:3_pos:492_len:550	Gram_pos_anchor,LPXTG_anchor,E-box	PF00746.12,TIGR01167,[none]	30.0,25.4,10.9	8.4e-05,0.002,13	Y	Y

P: 0.000434263, P_adj: 1, score: 17.2
106740588	_orf_frame:-2_pos:72_len:631	LPXTG_anchor,E-box,Gram_pos_anchor	TIGR01167,[none],PF00746.12	10.3,2.9,0.1	3.4,5.5e+02,26	N	Y
106740588	_orf_frame:-1_pos:586_len:125	null	[none]	0	88452	N	N
106740588	_orf_frame:-3_pos:1979_len:247	LPXTG_anchor,E-box	TIGR01167,[none]	6.9,5.0	8.3,2e+02	N	Y

P: 0.000434263, P_adj: 1, score: 40.3
106752414	_orf_frame:1_pos:-2_len:546	E-box	[none]	27.9	0.00036	N	N
106752414	_orf_frame:2_pos:794_len:105	null	[none]	0	88452	N	N
106752414	_orf_frame:2_pos:1526_len:572	Gram_pos_anchor,LPXTG_anchor	PF00746.12,TIGR01167	12.4,9.7	1.6,4	N	Y

P: 0.000861548, P_adj: 1, score: 74.8
106760017	_orf_frame:-3_pos:1971_len:290	E-box	[none]	1.8	9.2e+02	N	N
106760017	_orf_frame:-2_pos:2914_len:121	null	[none]	0	88452	N	N
106760017	_orf_frame:-3_pos:3525_len:123	null	[none]	0	88452	N	N
106760017	_orf_frame:-3_pos:3897_len:241	Sortase,sortase_fam	PF04203.4,TIGR01076	73.0,11.0	9.1e-18,3.5e-06	N	Y

P: 0.000861548, P_adj: 1, score: 68
106748735	_orf_frame:3_pos:0_len:313	Sortase_B,sortase_srtB	PF07170.2,TIGR03064	67.7,53.6	3.6e-16,8.9e-13	N	N
106748735	_orf_frame:3_pos:1026_len:436	null	[none]	0	88452	N	N
106748735	_orf_frame:2_pos:2333_len:329	null	[none]	0	88452	N	N
106748735	_orf_frame:3_pos:3090_len:286	E-box	[none]	0.3	1.8e+03	N	N

P: 0.00142439, P_adj: 1, score: 3.2
106757695	_orf_frame:3_pos:3492_len:338	E-box	[none]	1.5	1.1e+03	N	N
106757695	_orf_frame:-2_pos:0_len:168	null	[none]	0	88452	N	N
106757695	_orf_frame:-3_pos:590_len:363	null	[none]	0	88452	N	N
106757695	_orf_frame:-3_pos:1682_len:222	null	[none]	0	88452	N	N
106757695	_orf_frame:-1_pos:2287_len:190	E-box	[none]	1.7	9.5e+02	N	Y

Legend:

¹values are ordered by HMM score

GI NCBI Gi number of the analyzed contig

ORF open reading frame

HMMnames¹ names of the matching HMM models

HMMans¹ annotation numbers of the matching HMM models

HHMscores¹ scores of the matching HMM models

HMMevalues¹ E-values of the matching HMM models

signalpep Y if sequence is predicted to have N-terminal signal peptide, otherwise N

C-anchor Y if sequence is predicted to end on the C-terminus with a transmembrane region followed by a cytoplasmic domain

References:
1. Gill et al, 2006, Science, vol 312, 1355

¹values are ordered by HMM score
GI	NCBI Gi number of the analyzed contig
ORF	open reading frame
HMMnames¹	names of the matching HMM models
HMMans¹	annotation numbers of the matching HMM models
HHMscores¹	scores of the matching HMM models
HMMevalues¹	E-values of the matching HMM models
signalpep	Y if sequence is predicted to have N-terminal signal peptide, otherwise N
C-anchor	Y if sequence is predicted to end on the C-terminus with a transmembrane region followed by a cytoplasmic domain