Results

Parseable data
Dali: mol1A, MOLECULE: BETA-AMYLASE;

Query: mol1A

MOLECULE: BETA-AMYLASE;

Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious. Each neighbour has links to pairwise structural alignment with the query structure, and to the PDB format coordinate file where the neighbour is superimposed onto the query structure.

Expand gaps

Summary

    No:  Chain   Z    rmsd lali nres  %id PDB  Description
   1:  mol2-A 70.6  0.0  490   490  100 PDB  MOLECULE: BETA-AMYLASE;                                              
   2:  mol2-A  5.4  4.1  228   490    7 PDB  MOLECULE: BETA-AMYLASE;                                              
   3:  mol2-A  5.4  4.1  228   490    7 PDB  MOLECULE: BETA-AMYLASE;                                              
   4:  mol2-A  4.5  3.8  187   490    6 PDB  MOLECULE: BETA-AMYLASE;                                              
   5:  mol2-A  4.5  3.8  187   490    6 PDB  MOLECULE: BETA-AMYLASE;                                              
   6:  mol2-A  3.6  4.1  176   490    5 PDB  MOLECULE: BETA-AMYLASE;                                              
   7:  mol2-A  3.6  4.1  176   490    5 PDB  MOLECULE: BETA-AMYLASE;

Pairwise Structural Alignments

Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.

No 1: Query=mol1A Sbjct=mol2A Z-score=70.6

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DSSP  LLHHHHLLLEEEELLLLLLLLLLLLLLHHHHHHHHHHHHHHLLLEEEEEEEHHHHLLLLL
Query SNMLLNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGP   60
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct SNMLLNYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGP   60
DSSP  LLHHHHLLLEEEELLLLLLLLLLLLLLHHHHHHHHHHHHHHLLLEEEEEEEHHHHLLLLL


DSSP  LLLLLHHHHHHHHHHHHLLLEEEEEEELLLLLLLLLLLLLLLLLHHHHHHHHHLHHHEEE
Query KQYDWRAYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYT  120
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct KQYDWRAYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYT  120
DSSP  LLLLLHHHHHHHHHHHHLLLEEEEEEELLLLLLLLLLLLLLLLLHHHHHHHHHLHHHEEE


DSSP  LLLLLEEEEEELHHHLLLLLLLLLLHHHHHHHHHHHHHHHLHHHHHLLLEEEEEELLLHH
Query NRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPA  180
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct NRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPA  180
DSSP  LLLLLEEEEEELHHHLLLLLLLLLLHHHHHHHHHHHHHHHLHHHHHLLLEEEEEELLLHH


DSSP  HLLLLLLLLHHHLLLLLLLLLLLLLLHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLHHH
Query GELRYPSYPQSQGWEFPRIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDVPES  240
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct GELRYPSYPQSQGWEFPRIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDVPES  240
DSSP  HLLLLLLLLHHHLLLLLLLLLLLLLLHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLHHH


DSSP  LLLLLLLLHHHLHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLEEEEEELLLLLLLL
Query TGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYK  300
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct TGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYK  300
DSSP  LLLLLLLLHHHLHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLEEEEEELLLLLLLL


DSSP  LLLLLLHHHHLLLLLLLLLLLHHHHHHHHHLLLEEEELLLLLLHHHLLHHHLLLHHHHHH
Query VENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQ  360
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct VENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQ  360
DSSP  LLLLLLHHHHLLLLLLLLLLLHHHHHHHHHLLLEEEELLLLLLHHHLLHHHLLLHHHHHH


DSSP  HHHHHHHHLLLEEEEELLLLLLLHHHHHHHHHHHLLLLLLLLLLLLLLLLEEEELLLLHH
Query QVLSGGWREDIRVAGENALPRYDATAYNQIILNAKPQGVNNNGPPKLSMFGVTYLRLSDD  420
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct QVLSGGWREDIRVAGENALPRYDATAYNQIILNAKPQGVNNNGPPKLSMFGVTYLRLSDD  420
DSSP  HHHHHHHHLLLEEEEELLLLLLLHHHHHHHHHHHLLLLLLLLLLLLLLLLEEEELLLLHH


DSSP  HHLHHHHHHHHHHHHHHLLLLLLLLLHHHHLLLLLLLLLLLLLLLHHHHHHHHLLLLLLL
Query LLQKSNFNIFKKFVLKMHADQDYCANPQKYNHAITPLKPSAPKIPIEVLLEATKPTLPFP  480
ident ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct LLQKSNFNIFKKFVLKMHADQDYCANPQKYNHAITPLKPSAPKIPIEVLLEATKPTLPFP  480
DSSP  HHLHHHHHHHHHHHHHHLLLLLLLLLHHHHLLLLLLLLLLLLLLLHHHHHHHHLLLLLLL


DSSP  LLLLLLLLLL
Query WLPETDMKVD  490
ident ||||||||||
Sbjct WLPETDMKVD  490
DSSP  LLLLLLLLLL

No 2: Query=mol1A Sbjct=mol2A Z-score=5.4

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DSSP  llhhhhllleeeellllllllllllllhhhhhhhhhhhhhhlLLEEEEEEE-----hhhh
Query snmllnyvpvyvmlplgvvnvdnvfedpdglkeqllqlraagVDGVMVDVW-----wgii   55
ident                                                             
Sbjct -------------------------------------snmllNYVPVYVMLplgvvnvdn   23
DSSP  -------------------------------------llhhhHLLLEEEELlllllllll


DSSP  llLLLL-LLLL-HHHHHHHhhhhhllleeEEEEElllllllllllllllllhhhhhhhhh
Query elKGPK-QYDW-RAYRSLFqlvqecgltlQAIMSfhqcggnvgdivnipipqwvldiges  113
ident     |          |                |                           
Sbjct vfEDPDgLKEQlLQLRAAG---------vDGVMV------------------------dv   50
DSSP  llLLHHhHHHHhHHHHHHL---------lLEEEE------------------------ee


DSSP  lhhHEEEllllleeeeeelhHHLLlllllllLHHHHHHHHHHHHhhhlhhhhhllleeeE
Query nhdIFYTnrsgtrnkeyltvGVDNepifhgrTAIEIYSDYMKSFrenmsdflesgliidI  173
ident    |                                                        
Sbjct wwgIIEL--------kgpkqYDWR-------AYRSLFQLVQECG-------------ltL   82
DSSP  ehhHHLL--------lllllLLLH-------HHHHHHHHHHHLL-------------leE


DSSP  EELllhhhlLLLLLLL----HHHLllllllllLLLLlhhhhhhhhhhhhhlllllllLLL
Query EVGlgpageLRYPSYP----QSQGwefprigeFQCYdkylkadfkaavaraghpeweLPD  229
ident                                                            |
Sbjct QAI------MSFHQCGgnvgDIVN-------iPIPQ--------------------wVLD  109
DSSP  EEE------EELLLLLllllLLLL-------lLLLH--------------------hHHH


DSSP  LLLlllllhhhLLLL------------llllhhhLHHH-HHHHHHHHHHHHHHHHH-HHH
Query DAGkyndvpesTGFF------------ksngtyvTEKG-KFFLTWYSNKLLNHGDQ-ILD  275
ident               |                                            |
Sbjct IGE------snHDIFytnrsgtrnkeyltvgvdnEPIFhGRTAIEIYSDYMKSFREnMSD  163
DSSP  HHH------hlHHHEeellllleeeeeelhhhllLLLLlLLLHHHHHHHHHHHHHHhLHH


DSSP  HHHHHLllllleEEEEEL-----LLLLL--------------lLLLL-------------
Query EANKAFlgckvkLAIKVS-----GIHWW--------------yKVEN-------------  303
ident               | |                                           
Sbjct FLESGL-----iIDIEVGlgpagELRYPsypqsqgwefprigeFQCYdkylkadfkaava  218
DSSP  HHHLLL-----eEEEEELllhhhLLLLLlllhhhlllllllllLLLLlhhhhhhhhhhhh


DSSP  --------------------------------------lllhhhhllllllllLLLHHHH
Query --------------------------------------haaeltagyynlndrDGYRPIA  325
ident                                                             
Sbjct raghpewelpddagkyndvpestgffksngtyvtekgkffltwysnkllnhgdQILDEAN  278
DSSP  hllllllllllllllllllhhhllllllllhhhlhhhhhhhhhhhhhhhhhhhHHHHHHH


DSSP  HHHHHLLLEEEELL-------llllhHHLLhhhLLLH---------hhHHHHhHHHHHhl
Query RMLSRHHAILNFTC-------lemrdSEQPsdaKSGP---------qeLVQQvLSGGWre  369
ident          |                         |                 ||     
Sbjct KAFLGCKVKLAIKVsgihwwykvenhAAEL---TAGYynlndrdgyrpIARM-LSRHH--  332
DSSP  HHLLLLLLEEEEEEllllllllllllLLHH---HHLLlllllllllhhHHHH-HHHLL--


DSSP  lleEEEELLLLLL-------------LHHHHHHHHHHHLlllllllllllLLLLeEEELL
Query dirVAGENALPRY-------------DATAYNQIILNAKpqgvnnngppkLSMFgVTYLR  416
ident                                                        |    
Sbjct ---AILNFTCLEMrdseqpsdaksgpQELVQQVLSGGWR-----------EDIR-VAGEN  377
DSSP  ---LEEEELLLLLlhhhllhhhlllhHHHHHHHHHHHHH-----------LLLE-EEEEL


DSSP  -----lLHHHHlhhhhhhhhhhhhhhLLLLLLLLLH------------------------
Query -----lSDDLLqksnfnifkkfvlkmHADQDYCANP------------------------  447
ident                                    |                        
Sbjct alprydATAYN---------qiilnaKPQGVNNNGPpklsmfgvtylrlsddllqksnfn  428
DSSP  llllllHHHHH---------hhhhhhLLLLLLLLLLlllllleeeellllhhhhlhhhhh


DSSP  -----------------hhhlLLLLllllllllllhhhhhhhhLLLLL---lLLLLLLLL
Query -----------------qkynHAITplkpsapkipievlleatKPTLP---fPWLPETDM  487
ident                                                          |  
Sbjct ifkkfvlkmhadqdycanpqkYNHA----------itplkpsaPKIPIevllEATKPTLP  478
DSSP  hhhhhhhhhlllllllllhhhHLLL----------llllllllLLLLHhhhhHHHLLLLL


DSSP  LL---------l
Query KV---------d  490
ident             
Sbjct FPwlpetdmkvd  490
DSSP  LLllllllllll

No 3: Query=mol1A Sbjct=mol2A Z-score=5.4

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DSSP  -------------------------------------llhhhHLLLEEEELlllllllll
Query -------------------------------------snmllNYVPVYVMLplgvvnvdn   23
ident                                                             
Sbjct snmllnyvpvyvmlplgvvnvdnvfedpdglkeqllqlraagVDGVMVDVW-----wgii   55
DSSP  llhhhhllleeeellllllllllllllhhhhhhhhhhhhhhlLLEEEEEEE-----hhhh


DSSP  llLLHHhHHHHhHHHHHHL---------lLEEEE------------------------ee
Query vfEDPDgLKEQlLQLRAAG---------vDGVMV------------------------dv   50
ident     |          |                |                           
Sbjct elKGPK-QYDW-RAYRSLFqlvqecgltlQAIMSfhqcggnvgdivnipipqwvldiges  113
DSSP  llLLLL-LLLL-HHHHHHHhhhhhllleeEEEEElllllllllllllllllhhhhhhhhh


DSSP  ehhHHLL--------lllllLLLH-------HHHHHHHHHHHLL-------------leE
Query wwgIIEL--------kgpkqYDWR-------AYRSLFQLVQECG-------------ltL   82
ident    |                                                        
Sbjct nhdIFYTnrsgtrnkeyltvGVDNepifhgrTAIEIYSDYMKSFrenmsdflesgliidI  173
DSSP  lhhHEEEllllleeeeeelhHHLLlllllllLHHHHHHHHHHHHhhhlhhhhhllleeeE


DSSP  EEE------EELLLLLllllLLLL-------lLLLH--------------------hHHH
Query QAI------MSFHQCGgnvgDIVN-------iPIPQ--------------------wVLD  109
ident                                                            |
Sbjct EVGlgpageLRYPSYP----QSQGwefprigeFQCYdkylkadfkaavaraghpeweLPD  229
DSSP  EELllhhhlLLLLLLL----HHHLllllllllLLLLlhhhhhhhhhhhhhlllllllLLL


DSSP  HHH------hlHHHEeellllleeeeeelhhhllLLLLlLLLHHHHHHHHHHHHHHhLHH
Query IGE------snHDIFytnrsgtrnkeyltvgvdnEPIFhGRTAIEIYSDYMKSFREnMSD  163
ident               |                                            |
Sbjct DAGkyndvpesTGFF------------ksngtyvTEKG-KFFLTWYSNKLLNHGDQ-ILD  275
DSSP  LLLlllllhhhLLLL------------llllhhhLHHH-HHHHHHHHHHHHHHHHH-HHH


DSSP  HHHLLL-----eEEEEELllhhhLLLLLlllhhhlllllllllLLLLlhhhhhhhhhhhh
Query FLESGL-----iIDIEVGlgpagELRYPsypqsqgwefprigeFQCYdkylkadfkaava  218
ident               | |                                           
Sbjct EANKAFlgckvkLAIKVS-----GIHWW--------------yKVEN-------------  303
DSSP  HHHHHLllllleEEEEEL-----LLLLL--------------lLLLL-------------


DSSP  hllllllllllllllllllhhhllllllllhhhlhhhhhhhhhhhhhhhhhhhHHHHHHH
Query raghpewelpddagkyndvpestgffksngtyvtekgkffltwysnkllnhgdQILDEAN  278
ident                                                             
Sbjct --------------------------------------haaeltagyynlndrDGYRPIA  325
DSSP  --------------------------------------lllhhhhllllllllLLLHHHH


DSSP  HHLLLLLLEEEEEEllllllllllllLLHH---HHLLlllllllllhhHHHH-HHHLL--
Query KAFLGCKVKLAIKVsgihwwykvenhAAEL---TAGYynlndrdgyrpIARM-LSRHH--  332
ident          |                         |                 ||     
Sbjct RMLSRHHAILNFTC-------lemrdSEQPsdaKSGP---------qeLVQQvLSGGWre  369
DSSP  HHHHHLLLEEEELL-------llllhHHLLhhhLLLH---------hhHHHHhHHHHHhl


DSSP  ---LEEEELLLLLlhhhllhhhlllhHHHHHHHHHHHHH-----------LLLE-EEEEL
Query ---AILNFTCLEMrdseqpsdaksgpQELVQQVLSGGWR-----------EDIR-VAGEN  377
ident                                                        |    
Sbjct dirVAGENALPRY-------------DATAYNQIILNAKpqgvnnngppkLSMFgVTYLR  416
DSSP  lleEEEELLLLLL-------------LHHHHHHHHHHHLlllllllllllLLLLeEEELL


DSSP  llllllHHHHH---------hhhhhhLLLLLLLLLLlllllleeeellllhhhhlhhhhh
Query alprydATAYN---------qiilnaKPQGVNNNGPpklsmfgvtylrlsddllqksnfn  428
ident                                    |                        
Sbjct -----lSDDLLqksnfnifkkfvlkmHADQDYCANP------------------------  447
DSSP  -----lLHHHHlhhhhhhhhhhhhhhLLLLLLLLLH------------------------


DSSP  hhhhhhhhhlllllllllhhhHLLL----------llllllllLLLLHhhhhHHHLLLLL
Query ifkkfvlkmhadqdycanpqkYNHA----------itplkpsaPKIPIevllEATKPTLP  478
ident                                                          |  
Sbjct -----------------qkynHAITplkpsapkipievlleatKPTLP---fPWLPETDM  487
DSSP  -----------------hhhlLLLLllllllllllhhhhhhhhLLLLL---lLLLLLLLL


DSSP  LLllllllllll
Query FPwlpetdmkvd  490
ident             
Sbjct KV---------d  490
DSSP  LL---------l

No 4: Query=mol1A Sbjct=mol2A Z-score=4.5

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DSSP  llhhhhllleeeellllllllllllllhhhhhhhhhhhhhhllleeeeeeehhhhlllll
Query snmllnyvpvyvmlplgvvnvdnvfedpdglkeqllqlraagvdgvmvdvwwgiielkgp   60
ident                                                             
Sbjct ------------------------------------------------------------    0
DSSP  ------------------------------------------------------------


DSSP  lllllhhhhhhhhhhhHLLLEEEEEEELLLllllllllllllllhhhhhhhhhlhhheee
Query kqydwrayrslfqlvqECGLTLQAIMSFHQcggnvgdivnipipqwvldigesnhdifyt  120
ident                          |                                  
Sbjct -------------snmLLNYVPVYVMLPLG------------------------------   17
DSSP  -------------llhHHHLLLEEEELLLL------------------------------


DSSP  llllleeeeeELHHHLLllllllllHHHHHHHHHHHHHHHLhhhhhllleeEEEELllhh
Query nrsgtrnkeyLTVGVDNepifhgrtAIEIYSDYMKSFRENMsdflesgliiDIEVGlgpa  180
ident               |                      |             |        
Sbjct --------vvNVDNVFE--------DPDGLKEQLLQLRAAG---------vDGVMV----   48
DSSP  --------llLLLLLLL--------LHHHHHHHHHHHHHHL---------lLEEEE----


DSSP  hLLLLLlllhhhllllllllllllllhhhhhhhhhhhhhllllllllllllllllllhhh
Query gELRYPsypqsqgwefprigefqcydkylkadfkaavaraghpewelpddagkyndvpes  240
ident                                                             
Sbjct -DVWWG------------------------------------------------------   53
DSSP  -EEEHH------------------------------------------------------


DSSP  llllllllhhhlhhhhhhHHHHHHhhHHHHHHHHHHHHHHLlllllEEEEEEL-------
Query tgffksngtyvtekgkffLTWYSNklLNHGDQILDEANKAFlgckvKLAIKVS-------  293
ident                                                |    |       
Sbjct -------------iielkGPKQYD--WRAYRSLFQLVQECG----lTLQAIMSfhqcggn   94
DSSP  -------------hhlllLLLLLL--LHHHHHHHHHHHHLL----lEEEEEEElllllll


DSSP  ------------------------------------llLLLLLLL----LLLLhhhhlll
Query ------------------------------------giHWWYKVE----NHAAeltagyy  313
ident                                                    |        
Sbjct vgdivnipipqwvldigesnhdifytnrsgtrnkeyltVGVDNEPifhgRTAI-------  147
DSSP  llllllllllhhhhhhhhhlhhheeellllleeeeeelHHHLLLLllllLLHH-------


DSSP  lllllLLLHHHHHHHHHLL----LEEEELL------------------------------
Query nlndrDGYRPIARMLSRHH----AILNFTC------------------------------  339
ident      |         |        |                                   
Sbjct -eiysDYMKSFRENMSDFLesglIIDIEVGlgpagelrypsypqsqgwefprigefqcyd  206
DSSP  -hhhhHHHHHHHHHLHHHHhlllEEEEEELllhhhllllllllhhhllllllllllllll


DSSP  ---------------------------------------------------llllHHHLl
Query ---------------------------------------------------lemrDSEQp  348
ident                                                         |   
Sbjct kylkadfkaavaraghpewelpddagkyndvpestgffksngtyvtekgkffltwYSNK-  265
DSSP  hhhhhhhhhhhhhllllllllllllllllllhhhllllllllhhhlhhhhhhhhhHHHH-


DSSP  hhhllLHHHHHHHHHHHHHhlLLEEEEELLLL-------------------------llL
Query sdaksGPQELVQQVLSGGWreDIRVAGENALP-------------------------ryD  383
ident                         |                                   
Sbjct --llnHGDQILDEANKAFL--GCKVKLAIKVSgihwwykvenhaaeltagyynlndrdgY  321
DSSP  --hhhHHHHHHHHHHHHLL--LLLLEEEEEELlllllllllllllhhhhllllllllllL


DSSP  HHHHHHHHHHHlllllllllllllllleEEELLLL----------------HHHHlhHHH
Query ATAYNQIILNAkpqgvnnngppklsmfgVTYLRLS----------------DDLLqkSNF  427
ident                                                             
Sbjct RPIARMLSRHH----------------aILNFTCLemrdseqpsdaksgpqELVQ--QVL  363
DSSP  HHHHHHHHHLL----------------lEEEELLLlllhhhllhhhlllhhHHHH--HHH


DSSP  HHHHHHH----------------------------hhhlllLLLL---------------
Query NIFKKFV----------------------------lkmhadQDYC---------------  444
ident                                                             
Sbjct SGGWREDirvagenalprydataynqiilnakpqgvnnngpPKLSmfgvtylrlsddllq  423
DSSP  HHHHHLLleeeeelllllllhhhhhhhhhhhllllllllllLLLLlleeeellllhhhhl


DSSP  ----------------------llHHHHLLlllllllllllllhhhhhhhhlllllllLL
Query ----------------------anPQKYNHaitplkpsapkipievlleatkptlpfpWL  482
ident                                                             
Sbjct ksnfnifkkfvlkmhadqdycanpQKYNHA---------------------itplkpsAP  462
DSSP  hhhhhhhhhhhhhhlllllllllhHHHLLL---------------------lllllllLL


DSSP  LL---llLLLL-----------------
Query PE---tdMKVD-----------------  490
ident                             
Sbjct KIpievlLEATkptlpfpwlpetdmkvd  490
DSSP  LLlhhhhHHHHlllllllllllllllll

No 5: Query=mol1A Sbjct=mol2A Z-score=4.5

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DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct snmllnyvpvyvmlplgvvnvdnvfedpdglkeqllqlraagvdgvmvdvwwgiielkgp   60
DSSP  llhhhhllleeeellllllllllllllhhhhhhhhhhhhhhllleeeeeeehhhhlllll


DSSP  -------------llhHHHLLLEEEELLLL------------------------------
Query -------------snmLLNYVPVYVMLPLG------------------------------   17
ident                          |                                  
Sbjct kqydwrayrslfqlvqECGLTLQAIMSFHQcggnvgdivnipipqwvldigesnhdifyt  120
DSSP  lllllhhhhhhhhhhhHLLLEEEEEEELLLllllllllllllllhhhhhhhhhlhhheee


DSSP  --------llLLLLLLL--------LHHHHHHHHHHHHHHL---------lLEEEE----
Query --------vvNVDNVFE--------DPDGLKEQLLQLRAAG---------vDGVMV----   48
ident               |                      |             |        
Sbjct nrsgtrnkeyLTVGVDNepifhgrtAIEIYSDYMKSFRENMsdflesgliiDIEVGlgpa  180
DSSP  llllleeeeeELHHHLLllllllllHHHHHHHHHHHHHHHLhhhhhllleeEEEELllhh


DSSP  -EEEHH------------------------------------------------------
Query -DVWWG------------------------------------------------------   53
ident                                                             
Sbjct gELRYPsypqsqgwefprigefqcydkylkadfkaavaraghpewelpddagkyndvpes  240
DSSP  hLLLLLlllhhhllllllllllllllhhhhhhhhhhhhhllllllllllllllllllhhh


DSSP  -------------hhlllLLLLLL--LHHHHHHHHHHHHLL----lEEEEEEElllllll
Query -------------iielkGPKQYD--WRAYRSLFQLVQECG----lTLQAIMSfhqcggn   94
ident                                                |    |       
Sbjct tgffksngtyvtekgkffLTWYSNklLNHGDQILDEANKAFlgckvKLAIKVS-------  293
DSSP  llllllllhhhlhhhhhhHHHHHHhhHHHHHHHHHHHHHHLlllllEEEEEEL-------


DSSP  llllllllllhhhhhhhhhlhhheeellllleeeeeelHHHLLLLllllLLHH-------
Query vgdivnipipqwvldigesnhdifytnrsgtrnkeyltVGVDNEPifhgRTAI-------  147
ident                                                    |        
Sbjct ------------------------------------giHWWYKVE----NHAAeltagyy  313
DSSP  ------------------------------------llLLLLLLL----LLLLhhhhlll


DSSP  -hhhhHHHHHHHHHLHHHHhlllEEEEEELllhhhllllllllhhhllllllllllllll
Query -eiysDYMKSFRENMSDFLesglIIDIEVGlgpagelrypsypqsqgwefprigefqcyd  206
ident      |         |        |                                   
Sbjct nlndrDGYRPIARMLSRHH----AILNFTC------------------------------  339
DSSP  lllllLLLHHHHHHHHHLL----LEEEELL------------------------------


DSSP  hhhhhhhhhhhhhllllllllllllllllllhhhllllllllhhhlhhhhhhhhhHHHH-
Query kylkadfkaavaraghpewelpddagkyndvpestgffksngtyvtekgkffltwYSNK-  265
ident                                                         |   
Sbjct ---------------------------------------------------lemrDSEQp  348
DSSP  ---------------------------------------------------llllHHHLl


DSSP  --hhhHHHHHHHHHHHHLL--LLLLEEEEEELlllllllllllllhhhhllllllllllL
Query --llnHGDQILDEANKAFL--GCKVKLAIKVSgihwwykvenhaaeltagyynlndrdgY  321
ident                         |                                   
Sbjct sdaksGPQELVQQVLSGGWreDIRVAGENALP-------------------------ryD  383
DSSP  hhhllLHHHHHHHHHHHHHhlLLEEEEELLLL-------------------------llL


DSSP  HHHHHHHHHLL----------------lEEEELLLlllhhhllhhhlllhhHHHH--HHH
Query RPIARMLSRHH----------------aILNFTCLemrdseqpsdaksgpqELVQ--QVL  363
ident                                                             
Sbjct ATAYNQIILNAkpqgvnnngppklsmfgVTYLRLS----------------DDLLqkSNF  427
DSSP  HHHHHHHHHHHlllllllllllllllleEEELLLL----------------HHHHlhHHH


DSSP  HHHHHLLleeeeelllllllhhhhhhhhhhhllllllllllLLLLlleeeellllhhhhl
Query SGGWREDirvagenalprydataynqiilnakpqgvnnngpPKLSmfgvtylrlsddllq  423
ident                                                             
Sbjct NIFKKFV----------------------------lkmhadQDYC---------------  444
DSSP  HHHHHHH----------------------------hhhlllLLLL---------------


DSSP  hhhhhhhhhhhhhhlllllllllhHHHLLL---------------------lllllllLL
Query ksnfnifkkfvlkmhadqdycanpQKYNHA---------------------itplkpsAP  462
ident                                                             
Sbjct ----------------------anPQKYNHaitplkpsapkipievlleatkptlpfpWL  482
DSSP  ----------------------llHHHHLLlllllllllllllhhhhhhhhlllllllLL


DSSP  LLlhhhhHHHHlllllllllllllllll
Query KIpievlLEATkptlpfpwlpetdmkvd  490
ident                             
Sbjct PE---tdMKVD-----------------  490
DSSP  LL---llLLLL-----------------

No 6: Query=mol1A Sbjct=mol2A Z-score=3.6

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DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct snmllnyvpvyvmlplgvvnvdnvfedpdglkeqllqlraagvdgvmvdvwwgiielkgp   60
DSSP  llhhhhllleeeellllllllllllllhhhhhhhhhhhhhhllleeeeeeehhhhlllll


DSSP  ------------------------------------------------------------
Query ------------------------------------------------------------    0
ident                                                             
Sbjct kqydwrayrslfqlvqecgltlqaimsfhqcggnvgdivnipipqwvldigesnhdifyt  120
DSSP  lllllhhhhhhhhhhhhllleeeeeeelllllllllllllllllhhhhhhhhhlhhheee


DSSP  ------------------------------------------llhHHHLLLEEEELLLL-
Query ------------------------------------------snmLLNYVPVYVMLPLG-   17
ident                                                             
Sbjct nrsgtrnkeyltvgvdnepifhgrtaieiysdymksfrenmsdflESGLIIDIEVGLGPa  180
DSSP  llllleeeeeelhhhllllllllllhhhhhhhhhhhhhhhlhhhhHLLLEEEEEELLLHh


DSSP  --LLLLL-----------------------------------------------------
Query --VVNVD-----------------------------------------------------   22
ident                                                             
Sbjct geLRYPSypqsqgwefprigefqcydkylkadfkaavaraghpewelpddagkyndvpes  240
DSSP  hlLLLLLllhhhllllllllllllllhhhhhhhhhhhhhllllllllllllllllllhhh


DSSP  ---------------------lLLLLHHHHHHHHHHHHHHL----lLEEEEEEEH-hhhl
Query ---------------------nVFEDPDGLKEQLLQLRAAG----vDGVMVDVWW-giie   56
ident                                  |     |                    
Sbjct tgffksngtyvtekgkffltwySNKLLNHGDQILDEANKAFlgckvKLAIKVSGIhwwyk  300
DSSP  llllllllhhhlhhhhhhhhhhHHHHHHHHHHHHHHHHHHLlllllEEEEEELLLlllll


DSSP  LLLL----------lLLLLhHHHHHHHHHHHlLLEE-EEEEelllllllllllllllllh
Query LKGP----------kQYDWrAYRSLFQLVQEcGLTL-QAIMsfhqcggnvgdivnipipq  105
ident                      ||                                     
Sbjct VENHaaeltagyynlNDRD-GYRPIARMLSR-HHAIlNFTC-------------------  339
DSSP  LLLLllhhhhlllllLLLL-LLHHHHHHHHH-LLLEeEELL-------------------


DSSP  hhhhhhhhlhhheeellllleeeeeelhhHLLLLLLLlllhhhHHHHHHHHHHHHLHHHH
Query wvldigesnhdifytnrsgtrnkeyltvgVDNEPIFHgrtaieIYSDYMKSFRENMSDFL  165
ident                                                             
Sbjct ------------------------lemrdSEQPSDAK-----sGPQELVQQVLSGGWRED  370
DSSP  ------------------------llllhHHLLHHHL-----lLHHHHHHHHHHHHHHLL


DSSP  hllLEEEEEELllhhHLLLlllllhhhllllllllllllllhhhhhhhhhhhhhllllll
Query esgLIIDIEVGlgpaGELRypsypqsqgwefprigefqcydkylkadfkaavaraghpew  225
ident         |                                                   
Sbjct ---IRVAGENA----LPRY-----------------------------------------  382
DSSP  ---LEEEEELL----LLLL-----------------------------------------


DSSP  llllllllllllhhhllllllllhhhlhhhhhhhhhhhhhhHHHHHHHHHHHHHH-----
Query elpddagkyndvpestgffksngtyvtekgkffltwysnklLNHGDQILDEANKA-----  280
ident                                                      |      
Sbjct -----------------------------------------DATAYNQIILNAKPqgvnn  401
DSSP  -----------------------------------------LHHHHHHHHHHHLLlllll


DSSP  --lLLLL-LEEEEEELLLlllllllllllhhhHLLLLllllLLLHHHHHHHHHLLleeee
Query --fLGCK-VKLAIKVSGIhwwykvenhaaeltAGYYNlndrDGYRPIARMLSRHHailnf  337
ident                                                       |     
Sbjct ngpPKLSmFGVTYLRLSD--------------DLLQK----SNFNIFKKFVLKMH-----  438
DSSP  lllLLLLlLEEEELLLLH--------------HHHLH----HHHHHHHHHHHHHL-----


DSSP  llllllhhhllhhhlllhhhhhhhhhhhhhhLLLEeeeelllllllhhhhhhhhhhhlll
Query tclemrdseqpsdaksgpqelvqqvlsggwrEDIRvagenalprydataynqiilnakpq  397
ident                                 |                           
Sbjct -----------------------------adQDYC-------------------------  444
DSSP  -----------------------------llLLLL-------------------------


DSSP  lllllllllLLLLeeeellllhhhhlhhhhhhhhhhhhhhlllllLLLL-----------
Query gvnnngppkLSMFgvtylrlsddllqksnfnifkkfvlkmhadqdYCAN-----------  446
ident                                                             
Sbjct ---------ANPQ--------------------------kynhaiTPLKpsapkipievl  469
DSSP  ---------LLHH--------------------------hhllllLLLLlllllllhhhh


DSSP  --hhhhlllllllllLLLLLLhhhhhhhhlllllllllllllllll
Query --pqkynhaitplkpSAPKIPievlleatkptlpfpwlpetdmkvd  490
ident                   |                           
Sbjct leatkptlpfpwlpeTDMKVD-------------------------  490
DSSP  hhhhlllllllllllLLLLLL-------------------------

No 7: Query=mol1A Sbjct=mol2A Z-score=3.6

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DSSP  llhhhhllleeeellllllllllllllhhhhhhhhhhhhhhllleeeeeeehhhhlllll
Query snmllnyvpvyvmlplgvvnvdnvfedpdglkeqllqlraagvdgvmvdvwwgiielkgp   60
ident                                                             
Sbjct ------------------------------------------------------------    0
DSSP  ------------------------------------------------------------


DSSP  lllllhhhhhhhhhhhhllleeeeeeelllllllllllllllllhhhhhhhhhlhhheee
Query kqydwrayrslfqlvqecgltlqaimsfhqcggnvgdivnipipqwvldigesnhdifyt  120
ident                                                             
Sbjct ------------------------------------------------------------    0
DSSP  ------------------------------------------------------------


DSSP  llllleeeeeelhhhllllllllllhhhhhhhhhhhhhhhlhhhhHLLLEEEEEELLLHh
Query nrsgtrnkeyltvgvdnepifhgrtaieiysdymksfrenmsdflESGLIIDIEVGLGPa  180
ident                                                             
Sbjct ------------------------------------------snmLLNYVPVYVMLPLG-   17
DSSP  ------------------------------------------llhHHHLLLEEEELLLL-


DSSP  hlLLLLLllhhhllllllllllllllhhhhhhhhhhhhhllllllllllllllllllhhh
Query geLRYPSypqsqgwefprigefqcydkylkadfkaavaraghpewelpddagkyndvpes  240
ident                                                             
Sbjct --VVNVD-----------------------------------------------------   22
DSSP  --LLLLL-----------------------------------------------------


DSSP  llllllllhhhlhhhhhhhhhhHHHHHHHHHHHHHHHHHHLlllllEEEEEELLLlllll
Query tgffksngtyvtekgkffltwySNKLLNHGDQILDEANKAFlgckvKLAIKVSGIhwwyk  300
ident                                  |     |                    
Sbjct ---------------------nVFEDPDGLKEQLLQLRAAG----vDGVMVDVWW-giie   56
DSSP  ---------------------lLLLLHHHHHHHHHHHHHHL----lLEEEEEEEH-hhhl


DSSP  LLLLllhhhhlllllLLLL-LLHHHHHHHHH-LLLEeEELL-------------------
Query VENHaaeltagyynlNDRD-GYRPIARMLSR-HHAIlNFTC-------------------  339
ident                      ||                                     
Sbjct LKGP----------kQYDWrAYRSLFQLVQEcGLTL-QAIMsfhqcggnvgdivnipipq  105
DSSP  LLLL----------lLLLLhHHHHHHHHHHHlLLEE-EEEEelllllllllllllllllh


DSSP  ------------------------llllhHHLLHHHL-----lLHHHHHHHHHHHHHHLL
Query ------------------------lemrdSEQPSDAK-----sGPQELVQQVLSGGWRED  370
ident                                                             
Sbjct wvldigesnhdifytnrsgtrnkeyltvgVDNEPIFHgrtaieIYSDYMKSFRENMSDFL  165
DSSP  hhhhhhhhlhhheeellllleeeeeelhhHLLLLLLLlllhhhHHHHHHHHHHHHLHHHH


DSSP  ---LEEEEELL----LLLL-----------------------------------------
Query ---IRVAGENA----LPRY-----------------------------------------  382
ident         |                                                   
Sbjct esgLIIDIEVGlgpaGELRypsypqsqgwefprigefqcydkylkadfkaavaraghpew  225
DSSP  hllLEEEEEELllhhHLLLlllllhhhllllllllllllllhhhhhhhhhhhhhllllll


DSSP  -----------------------------------------LHHHHHHHHHHHLLlllll
Query -----------------------------------------DATAYNQIILNAKPqgvnn  401
ident                                                      |      
Sbjct elpddagkyndvpestgffksngtyvtekgkffltwysnklLNHGDQILDEANKA-----  280
DSSP  llllllllllllhhhllllllllhhhlhhhhhhhhhhhhhhHHHHHHHHHHHHHH-----


DSSP  lllLLLLlLEEEELLLLH--------------HHHLH----HHHHHHHHHHHHHL-----
Query ngpPKLSmFGVTYLRLSD--------------DLLQK----SNFNIFKKFVLKMH-----  438
ident                                                       |     
Sbjct --fLGCK-VKLAIKVSGIhwwykvenhaaeltAGYYNlndrDGYRPIARMLSRHHailnf  337
DSSP  --lLLLL-LEEEEEELLLlllllllllllhhhHLLLLllllLLLHHHHHHHHHLLleeee


DSSP  -----------------------------llLLLL-------------------------
Query -----------------------------adQDYC-------------------------  444
ident                                 |                           
Sbjct tclemrdseqpsdaksgpqelvqqvlsggwrEDIRvagenalprydataynqiilnakpq  397
DSSP  llllllhhhllhhhlllhhhhhhhhhhhhhhLLLEeeeelllllllhhhhhhhhhhhlll


DSSP  ---------LLHH--------------------------hhllllLLLLlllllllhhhh
Query ---------ANPQ--------------------------kynhaiTPLKpsapkipievl  469
ident                                                             
Sbjct gvnnngppkLSMFgvtylrlsddllqksnfnifkkfvlkmhadqdYCAN-----------  446
DSSP  lllllllllLLLLeeeellllhhhhlhhhhhhhhhhhhhhlllllLLLL-----------


DSSP  hhhhlllllllllllLLLLLL-------------------------
Query leatkptlpfpwlpeTDMKVD-------------------------  490
ident                   |                           
Sbjct --pqkynhaitplkpSAPKIPievlleatkptlpfpwlpetdmkvd  490
DSSP  --hhhhlllllllllLLLLLLhhhhhhhhlllllllllllllllll