AFDB comparison

Do heuristic search of query structure against a cropped AlphaFold database (AFDB2). Cropping removes residues from AlphaFold models that have pLDDT<60. Example output

STEP 1 - Enter your query protein structure

Structures must be specified by Dali's internal AFDB2 structure identifiers (e.g., fbuzA) or by concatenating the PDB identifier (4 characters) and a chain identifier (1 character).

OR upload file

STEP 2 - Select target proteins or taxon

STEP 3 - Optional data

You may leave an e-mail address for notification when the job has finished. The job title is used as subject heading in the e-mail.

STEP 4 - Submit your job

Report bugs to liisa dot holm at helsinki dot fi