| Query | Sorted by Z-score
Dali Z-scores take into account both the closeness of the structural fit and domain coverage. Domains are compact folding units. Z-scores are higher for complete coverage of domains and lower for partial coverage of domains.
| Seriated
Seriation maximizes the similarity of secondary structure assignments between adjacent rows in the stacked alignment. Proteins with similar function descriptions tend to be grouped together better in this view than in the Z-score sorted view, especieally if the query protein has multiple domains.
| Data |
|---|---|---|---|
| fbuzA.HUMAN | HTML summary Click on the HTML summary link for interactive browsing of the result list. Select interesting subsets for further exploration using tools that include stacked alignments with domain family annotations, 3-D superpositions, sequence search and function prediction.
Graphical overview:
The graphical overviews show all matches as a stacked alignment in MSAviewer. Stacked alignment omits insertions relative to the query protein. The secondary structure overview is collapsed to three states, giving a clearer picture than the amino acid sequence overview.
| HTML summary Graphical overview: | Download raw data
Raw data can be downloaded in tsv format (tab-separated values) for further analysis offline.
|
to be published
Query: fbuzA
Target: HUMAN
Preset: sampler
Prefilters:
3-D lookup (wolf) = 1
foldseek = 1
Termination criteria:
Budget = 2000
Dropoff = 200
kNN = 100000
Radius = 2.0
Timeout [seconds] = 1800
Reason for termination: empty queue
Time [seconds]:
prefilter 0.00
search 37.04
annotation 3.58
total 40.63
Date: Tue Aug 20 00:32:06 2024